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Recurrent fistula: why it comes back

Published 13 March 2026 ·Last reviewed 13 March 2026 by the editorial team ·How we create our content

At a glance

Fistula recurrence is a known possibility after any fistula procedure. While most fistula treatments have good success rates, a proportion of fistulas do come back. Understanding why this happens, what the risk factors are, and what can be done about it helps people navigate this challenging situation.

Why fistulas recur

Unidentified tracts

One of the most common reasons for recurrence is a secondary fistula tract that was not identified or treated during the original surgery. Fistulas can have multiple branches, and if one is missed, it can serve as the source for recurrence.

Incomplete healing

If the fistula tract does not fully close during healing — which can happen if the wound closes at the surface before the deeper tract has healed — the residual tract can become reinfected and reopen.

Underlying conditions

Crohn’s disease and other inflammatory conditions create ongoing inflammation that drives fistula formation. Treating the fistula without controlling the underlying disease often leads to recurrence.

Complex anatomy

Some fistulas are inherently complex — multiple tracts, horseshoe extensions, or involvement of significant sphincter muscle. These are harder to treat definitively and have higher recurrence rates.

Infection

Post-operative infection at the surgical site can disrupt healing and lead to recurrence.

Risk factors

Factors associated with higher recurrence risk:

  • Complex fistula anatomy (multiple tracts, horseshoe)
  • Crohn’s disease or other IBD
  • Previous fistula recurrence (recurrence risk increases with each episode)
  • Incomplete drainage of abscess before definitive surgery
  • Certain surgical techniques — sphincter-preserving procedures generally have higher recurrence rates than fistulotomy, as a trade-off for protecting continence

What to do if it recurs

Do not assume the worst

Recurrence is frustrating and disheartening, but it is manageable. The fact that it came back does not mean it cannot be treated.

See your surgical team

Contact your surgeon or colorectal team. They will typically:

  • Examine the area
  • Arrange updated imaging (MRI) to map the current fistula anatomy
  • Assess whether the recurrence is in the same location or a new tract
  • Discuss treatment options

Treatment options for recurrent fistula

  • Seton placement — to control drainage and allow inflammation to settle
  • Repeat fistulotomy — if the anatomy allows
  • LIFT procedure — for transsphincteric recurrences
  • Advancement flap — for complex recurrences
  • Medical management — particularly for Crohn’s-related recurrences
  • Newer techniques — VAAFT, fistula plug, and other evolving approaches

The choice depends on the anatomy, what was done previously, and the surgeon’s assessment.

The emotional dimension

Fistula recurrence is one of the most emotionally difficult experiences in colorectal care. People describe:

  • Devastation when symptoms return after months of healing
  • Anger at the condition and the process
  • Fatigue from the prospect of more surgery and more recovery
  • Fear that it will keep coming back

These feelings are valid and understandable. Recurrence does not mean the first treatment was wrong or that the situation is hopeless. It means the fistula is complex, and complex problems sometimes need more than one intervention.

Common questions

How common is fistula recurrence?

Recurrence rates depend on the type of fistula and the procedure performed. Simple fistulas treated with fistulotomy have recurrence rates below 10 percent. More complex fistulas treated with sphincter-preserving techniques may have recurrence rates of 20 to 40 percent. Crohn's-related fistulas have the highest recurrence rates.

Why do fistulas come back?

Common reasons include: unidentified secondary tracts that were not treated, inadequate drainage of the primary tract, underlying conditions like Crohn's disease, infection at the surgical site, and complex anatomy that makes complete treatment difficult.

Can a recurrent fistula be treated?

Yes. Recurrent fistulas are treatable, though the approach may differ from the first surgery. Your surgeon will reassess the anatomy — often with updated imaging — and recommend an appropriate strategy. Having had a previous surgery does not prevent successful treatment of a recurrence.

How do I know if my fistula has come back?

The signs are usually similar to the original presentation: return of discharge or drainage, pain or swelling near the anus, a new or reopened opening in the skin, and sometimes abscess formation. If you notice any of these after a period of healing, contact your surgical team.

When to seek care Heavy bleeding or feeling faint? Get emergency help now. Emergency: 911

Not sure how urgent it is? Get help today.

  1. Emergency

    Heavy bleeding, black tarry stools, feeling faint, severe pain or trouble breathing.

    Call 911 or go to the ER.

  2. Today

    Fever, pain getting worse, a hot swollen lump, or trouble passing urine.

    Call your doctor or go to urgent care.

  3. Soon

    Bleeding or bowel changes nobody has checked, or anything lasting 3 weeks.

    Book a doctor’s appointment.

Feeling overwhelmed? Call or text 988, any time.

See all the signs

For this topic, get medical advice if you notice:

  • New or increasing pain, swelling, or discharge — may indicate recurrence or abscess
  • Fever alongside perianal symptoms
  • Return of drainage from a previously healed site
  • Any symptoms that feel like a return of the original fistula

Recording how you feel is not the same as being checked. These are the signs that need a doctor’s attention.

Call 911 or go to the emergency room now if you have:

  • bleeding that will not stop, a lot of blood (the toilet water turns red, or you pass large clots), or any bleeding with feeling faint or dizzy
  • fainting, a racing heart or trouble breathing
  • confusion or slurred speech, extreme shivering, no urine in a day, or blotchy skin
  • sudden severe belly pain, or a swollen, hard belly with vomiting or not passing stool or gas
  • you cannot pass urine at all, or your bladder feels full and painful and you can’t empty it
  • redness, swelling or severe pain spreading quickly around your anus, genitals or groin, especially with a fever or feeling very ill
  • a fever with a painful swelling near your anus if you have diabetes or a weakened immune system (for example, from chemotherapy or transplant medicines)
  • black, tarry stools

Call your doctor or go to urgent care today (or the ER if you can’t be seen today) if you have:

  • a temperature of 100.4°F (38°C) or higher, chills, vomiting, or feeling generally unwell
  • pain that is getting worse over days, or severe pain that stops you sitting or sleeping
  • a hot, swollen or very tender lump near your anus or at the top of the crease between your buttocks, or foul-smelling discharge
  • trouble urinating
  • bleeding that is getting heavier or more frequent, or blood mixed into your stool
  • feeling much more tired than usual, looking pale, or getting out of breath more easily than you used to
  • not passing stool for several days, or new belly pain

Make an appointment with your doctor if:

  • you have never had these symptoms checked by a doctor or nurse — whatever your age
  • you have had rectal bleeding for more than 3 weeks
  • your bowel movements have been looser, thinner or more frequent than usual for 3 weeks or more, or you have lost weight without trying
  • symptoms have not settled after a week or so, or keep coming back
  • you notice a new lump near your anus, between your buttocks or in your belly, or an itch or discharge that does not clear
  • you have new leakage or trouble controlling your bowels
  • you are 45 or over, or have a family history of bowel cancer or inflammatory bowel disease, and any of these symptoms are new for you

If you are unsure, it is always reasonable to ask. If things feel overwhelming, call or text 988 (Suicide & Crisis Lifeline) or chat at 988lifeline.org, any time. If you don’t feel safe, call 911.

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