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Fistulotomy wound not healing: when to worry

Published 12 March 2026 ·Last reviewed 12 March 2026 by the editorial team ·How we create our content

At a glance

Fistulotomy wounds heal from the inside out, and that process takes time. Many people find themselves weeks into recovery, looking at a wound that still seems open, and wondering whether something is wrong. This guide covers what a normal healing trajectory looks like, what genuinely slow healing looks like, and when it is time to go back to your surgeon.

Most of the time, a fistulotomy wound that seems slow is simply following the normal — if frustratingly gradual — course. But sometimes slow healing is a signal that something needs attention.

What normal fistulotomy healing looks like

Fistulotomy wounds are intentionally left open. They are not stitched closed. This means they heal by secondary intention — the tissue fills in from the bottom up and the edges gradually draw together. It is a slower process than a sutured wound, and it looks different at every stage.

Weeks 1 to 2

  • The wound is open and actively draining. This is expected.
  • Pain is often most significant during this period, especially around bowel movements.
  • The wound may look raw and larger than expected. This is normal.
  • Gauze pads, sitz baths, and keeping the area clean are the main tasks.

Weeks 3 to 4

  • Drainage typically decreases. The fluid becomes clearer and less frequent.
  • The wound starts to look smaller — the edges are drawing in.
  • Pain is usually less intense, though bowel movements may still cause discomfort.
  • Many people notice the wound bed looking pink and healthy — this is granulation tissue, which is a good sign.

Weeks 5 to 8

  • The wound continues to shrink. Progress may feel slow from day to day but is visible week to week.
  • Drainage is minimal or has stopped.
  • Most people are able to return to normal activities during this period.
  • The wound surface may close while the deeper tissue continues to fill in beneath.

Weeks 8 to 12 and beyond

  • Most fistulotomy wounds are fully or nearly fully healed by this point.
  • Some deeper wounds take longer. A wound that is still making steady progress at 10 or 12 weeks is not necessarily a problem.
  • The healed area may feel different — firmer, slightly raised, or with altered sensation. This is common.

When healing is genuinely slow

A wound that is healing slowly but still making progress is different from a wound that has stalled. The distinction matters.

Signs of normal slow healing

  • The wound is getting smaller, just slowly
  • Drainage is decreasing over time
  • Pain is gradually improving
  • The wound bed looks pink and clean
  • Each follow-up visit shows some progress, even if small

Signs that something may need attention

  • The wound has stopped getting smaller. If there is no visible change over a two-week period, this is worth discussing with your surgeon.
  • Drainage has changed character. An increase in drainage, especially if it becomes thick, discoloured, or foul-smelling, can indicate infection or a new tract.
  • Pain is increasing rather than decreasing. Post-fistulotomy pain should follow a general downward trend. Pain that reverses course warrants assessment.
  • The wound looks different. New redness, swelling, or warmth around the wound edges — as opposed to the normal pink of healing tissue — can indicate infection.
  • A new opening has appeared near the wound. This may suggest a recurrent or additional fistula tract.

Why some fistulotomy wounds heal slowly

Several factors can contribute to slower healing. Understanding them may help you have a more productive conversation with your surgeon.

Wound size and depth

Larger and deeper fistulotomy wounds take longer to heal. This is straightforward — there is more tissue to fill in. A complex fistula that required a more extensive procedure will have a longer healing timeline than a simple, shallow one.

Ongoing infection

If the original infection was not fully cleared, or if a new infection develops, healing will stall or reverse. Signs include increased pain, swelling, warmth, fever, and changes in discharge.

Underlying tract not fully addressed

Sometimes a fistula has branching tracts that are not visible during the initial procedure. If a tract remains, the wound may appear to heal on the surface while continuing to drain or re-form underneath. This is one of the more common reasons for non-healing.

General health factors

Conditions that affect wound healing generally — such as diabetes, immunosuppression, poor nutrition, or smoking — can slow fistulotomy wound healing specifically. If you have any of these factors, mention them to your surgical team if you have not already.

Bowel movement trauma

Repeated passage of hard stools across the healing wound can disrupt the tissue and slow progress. Keeping stools soft during the healing period is one of the most commonly emphasised pieces of advice from both surgeons and people who have been through this recovery.

What to do if you are worried

Step 1: check the trajectory, not the snapshot

A wound that looks concerning on any given day may still be on track. The question is not “does this wound look healed?” but “is this wound making progress compared to last week?” Taking photos at regular intervals can help you track changes that are too gradual to notice day to day.

Step 2: contact your surgeon

If your wound has stalled, changed character, or you are experiencing new or increased symptoms, the right step is to contact your surgical team. This is not overreacting — it is what follow-up care is for. Specifically, reach out if:

  • No visible progress for more than two weeks
  • New or worsening pain
  • Changes in discharge (volume, colour, smell)
  • Fever or feeling generally unwell
  • A new opening near the wound

Step 3: ask specific questions

When you see your surgeon, useful questions include:

  • Is my wound healing at a normal pace for its size?
  • Do you see healthy granulation tissue?
  • Is there any sign of a remaining tract?
  • Is there anything I should change about my wound care?
  • At what point would you consider further intervention?

What people commonly try to support healing

These are patterns people frequently describe. They are not treatment recommendations.

  • Sitz baths — warm water, two to three times daily. Consistently described as the single most helpful thing for wound comfort and cleanliness.
  • Stool softeners — keeping bowel movements soft to avoid traumatising the healing wound.
  • High-fiber diet and adequate water — supporting soft, regular stools from the dietary side.
  • Wound hygiene — gentle cleaning after bowel movements, typically with water rather than wiping.
  • Patience — people who have been through this consistently emphasise that fistulotomy healing takes longer than expected, and that slow progress is still progress.

The emotional side of slow healing

Waiting for a wound to heal in a sensitive area is exhausting. People commonly describe:

  • Frustration at the pace of healing
  • Anxiety every time they look at the wound
  • Comparing their timeline to others and feeling behind
  • Fear that slow healing means the procedure failed
  • Difficulty explaining to work or family why recovery is taking so long

These feelings are normal. Healing from a fistulotomy is a marathon, not a sprint. If the emotional weight of the recovery is becoming difficult to manage, that is worth mentioning to your doctor as well.

When slow healing becomes non-healing

In some cases, a wound that is genuinely not healing may require further intervention. This is a decision for your surgical team and depends on the specific cause.

Possible next steps your surgeon may consider include:

  • Examination under anaesthesia to check for remaining tracts
  • Imaging to assess the wound and surrounding tissue
  • Adjustments to wound care approach
  • Further surgical intervention if needed

The important thing is that non-healing fistulotomy wounds have options. If your wound is stuck, that is a reason to go back to your surgeon — not a reason to assume the worst.

Common questions

How long does a fistulotomy wound normally take to heal?

Most people describe full healing taking anywhere from 4 to 12 weeks, depending on the size and depth of the wound. Shallow fistulotomy wounds may close in 4 to 6 weeks. Deeper or more complex wounds can take 8 to 12 weeks or longer. Your surgeon can give you a more specific estimate based on your particular situation.

Is it normal for a fistulotomy wound to still be open after 6 weeks?

For many people, yes. Fistulotomy wounds heal from the inside out, and the surface can look open while deeper healing is progressing. What matters more than how the wound looks at any single point is whether it is still making progress — gradually getting smaller, draining less, and causing less discomfort over time.

Can a fistulotomy wound heal and then reopen?

This does happen in some cases. A wound that appeared to be healing may reopen if there is an underlying tract that was not fully addressed, or if an infection develops. If your wound reopens after appearing to close, contact your surgeon — this needs assessment rather than waiting.

When to seek care Heavy bleeding or feeling faint? Get emergency help now. Emergency: 911

Not sure how urgent it is? Get help today.

  1. Emergency

    Heavy bleeding, black tarry stools, feeling faint, severe pain or trouble breathing.

    Call 911 or go to the ER.

  2. Today

    Fever, pain getting worse, a hot swollen lump, or trouble passing urine.

    Call your doctor or go to urgent care.

  3. Soon

    Bleeding or bowel changes nobody has checked, or anything lasting 3 weeks.

    Book a doctor’s appointment.

Feeling overwhelmed? Call or text 988, any time.

See all the signs

For this topic, get medical advice if you notice:

  • Wound that shows signs of infection — redness, swelling, warmth, pus
  • Increasing pain rather than gradual improvement
  • Fever or feeling unwell
  • Wound that has stopped progressing for more than 2 weeks

Recording how you feel is not the same as being checked. These are the signs that need a doctor’s attention.

Call 911 or go to the emergency room now if you have:

  • bleeding that will not stop, a lot of blood (the toilet water turns red, or you pass large clots), or any bleeding with feeling faint or dizzy
  • fainting, a racing heart or trouble breathing
  • confusion or slurred speech, extreme shivering, no urine in a day, or blotchy skin
  • sudden severe belly pain, or a swollen, hard belly with vomiting or not passing stool or gas
  • you cannot pass urine at all, or your bladder feels full and painful and you can’t empty it
  • redness, swelling or severe pain spreading quickly around your anus, genitals or groin, especially with a fever or feeling very ill
  • a fever with a painful swelling near your anus if you have diabetes or a weakened immune system (for example, from chemotherapy or transplant medicines)
  • black, tarry stools

Call your doctor or go to urgent care today (or the ER if you can’t be seen today) if you have:

  • a temperature of 100.4°F (38°C) or higher, chills, vomiting, or feeling generally unwell
  • pain that is getting worse over days, or severe pain that stops you sitting or sleeping
  • a hot, swollen or very tender lump near your anus or at the top of the crease between your buttocks, or foul-smelling discharge
  • trouble urinating
  • bleeding that is getting heavier or more frequent, or blood mixed into your stool
  • feeling much more tired than usual, looking pale, or getting out of breath more easily than you used to
  • not passing stool for several days, or new belly pain

Make an appointment with your doctor if:

  • you have never had these symptoms checked by a doctor or nurse — whatever your age
  • you have had rectal bleeding for more than 3 weeks
  • your bowel movements have been looser, thinner or more frequent than usual for 3 weeks or more, or you have lost weight without trying
  • symptoms have not settled after a week or so, or keep coming back
  • you notice a new lump near your anus, between your buttocks or in your belly, or an itch or discharge that does not clear
  • you have new leakage or trouble controlling your bowels
  • you are 45 or over, or have a family history of bowel cancer or inflammatory bowel disease, and any of these symptoms are new for you

If you are unsure, it is always reasonable to ask. If things feel overwhelming, call or text 988 (Suicide & Crisis Lifeline) or chat at 988lifeline.org, any time. If you don’t feel safe, call 911.

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