At a glance
For people with a chronic anal fissure that has not responded to conservative treatment, the two main procedural options are botox injection and lateral internal sphincterotomy (LIS). Both aim to relax the internal sphincter muscle to break the fissure-spasm cycle and allow healing.
They differ significantly in approach, success rate, risk profile, and reversibility. This guide compares them clearly to help you understand the trade-offs before discussing with your surgeon.
How each procedure works
Botox
Botulinum toxin is injected into the internal sphincter muscle, temporarily paralysing it. This relaxes the spasm, increases blood flow to the fissure, and creates a window for healing. The effect lasts two to four months, after which the muscle returns to normal function.
LIS (lateral internal sphincterotomy)
A small portion of the internal sphincter muscle is surgically divided (cut). This permanently reduces the resting pressure of the sphincter, breaking the spasm cycle and allowing the fissure to heal. The effect is permanent.
The comparison
Success rate
LIS: approximately 90 to 95 percent for chronic fissure healing. It is the most effective surgical treatment available.
Botox: approximately 50 to 80 percent, depending on the study and definition of success. Some people heal completely. Others experience partial improvement. Some do not respond.
Reversibility
LIS: permanent. The muscle that is divided does not regrow. This is a one-way decision.
Botox: temporary. The effect wears off in two to four months. If there are unwanted effects, they resolve on their own.
Continence risk
LIS: there is a small but real risk of minor continence changes — most commonly difficulty controlling gas. The risk of significant faecal incontinence is very low but not zero. This risk is permanent.
Botox: temporary continence changes are possible while the botox is active but resolve as the effect wears off. This temporary nature makes botox lower-risk from a continence perspective.
Recovery
LIS: a surgical procedure requiring anaesthesia, typically as a day case. Recovery takes two to four weeks for most people, with pain during the first week.
Botox: a brief injection, sometimes done under sedation, sometimes in clinic. Recovery is minimal — most people return to normal activities within a day or two.
Pain
LIS: post-operative pain for several days to a week, though many people describe it as less severe than the chronic fissure pain they were living with.
Botox: the injection itself causes minimal pain. Post-procedure discomfort is typically slight.
Recurrence
LIS: recurrence rates are low — the permanent sphincter modification makes re-tearing less likely.
Botox: recurrence is more common, as the sphincter returns to its normal pressure once the botox wears off. Some people need a second injection or proceed to LIS.
How people typically decide
The decision between botox and LIS often follows a pattern:
Try botox first
Many clinicians recommend botox as a first step because:
- It is less invasive
- It is reversible
- If it works, the fissure heals without permanent sphincter modification
- If it does not work, LIS remains available
Go directly to LIS
Some clinicians recommend LIS directly when:
- The fissure is severe and longstanding
- Conservative treatment and topical therapies have already failed
- The patient prefers a single, definitive procedure
- The anatomy and sphincter assessment suggest low continence risk
Factors that influence the choice
- How long the fissure has been chronic — longer-standing fissures may be less likely to respond to botox alone
- Sphincter pressure — very high resting pressure may respond better to LIS
- Continence concerns — people with any existing continence issues may prefer the reversible option
- Personal preference — some people want to try the least invasive option first; others want the highest chance of resolution
The honest picture
Neither option is perfect.
Botox offers safety and reversibility at the cost of a lower success rate and the possibility of needing further treatment.
LIS offers the highest success rate at the cost of a permanent change to the sphincter and a small but non-zero risk of continence change.
Most people who go through this decision describe it as genuinely difficult. There is no obviously right answer — it depends on your specific situation, your risk tolerance, and your priorities. This is a conversation to have thoroughly with your surgeon, who can assess your fissure, your sphincter, and your individual risk profile.